@> 636 atoms and 10 coordinate set(s) were parsed in 0.06s.
@> 624 atoms and 10 coordinate set(s) were parsed in 0.06s.

Visualizations and results¶

Original Structure Visualization¶

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@> 636 atoms and 10 coordinate set(s) were parsed in 0.06s.
@> 624 atoms and 10 coordinate set(s) were parsed in 0.06s.
2naoF_TEMP
Blue:1iytA
Red:2naoF

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AlphaFold predictions¶

Best AF prediction to fold 1¶

@> 318 atoms and 1 coordinate set(s) were parsed in 0.01s.
@> 636 atoms and 10 coordinate set(s) were parsed in 0.06s.
Blue:ShallowMsa_004_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000
Red:1iytA

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Best AF prediction to fold 2¶

@> 318 atoms and 1 coordinate set(s) were parsed in 0.01s.
@> 624 atoms and 10 coordinate set(s) were parsed in 0.06s.
Blue:ShallowMsa_000_unrelaxed_rank_004_alphafold2_ptm_model_3_seed_000
Red:2naoF

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EsmFold Prediction¶

Best EsmFold prediction to fold 1¶

@> 636 atoms and 10 coordinate set(s) were parsed in 0.06s.
@> 296 atoms and 1 coordinate set(s) were parsed in 0.01s.
reference and target coordinate arrays must have same number of atoms
@> 636 atoms and 10 coordinate set(s) were parsed in 0.06s.
@> 296 atoms and 1 coordinate set(s) were parsed in 0.01s.
ShallowMsa_001_5_TEMP
Blue:1iytA
Red:ShallowMsa_001_5

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Best EsmFold prediction to fold 2¶

single positional indexer is out-of-bounds
name 'max_esm_pdb2' is not defined

Contact maps Msa Transformers¶

No max_f1Score_pdb1
No max_f1Score_pdb2
No max_precision_pdb1
No max_precision_pdb2
No max_recall_pdb1
No max_recall_pdb2
No max_f1Score_pdb1
No max_f1Score_pdb2
No cmap_pred_precision_1
No cmap_pred_precision_2
No cmap_pred_recall_1
No cmap_pred_recall_2
No plot for f1Score_1
No plot for f1Score_2
No description has been provided for this image
No precision_1
No precision_2
No description has been provided for this image
No recall_1
No recall_2
No description has been provided for this image