@> 636 atoms and 10 coordinate set(s) were parsed in 0.06s.
@> 624 atoms and 10 coordinate set(s) were parsed in 0.06s.
Visualizations and results¶
Original Structure Visualization¶
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@> 636 atoms and 10 coordinate set(s) were parsed in 0.06s.
@> 624 atoms and 10 coordinate set(s) were parsed in 0.06s.
2naoF_TEMP
Blue:1iytA Red:2naoF
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AlphaFold predictions¶
Best AF prediction to fold 1¶
@> 318 atoms and 1 coordinate set(s) were parsed in 0.01s.
@> 636 atoms and 10 coordinate set(s) were parsed in 0.06s.
Blue:ShallowMsa_004_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000 Red:1iytA
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Best AF prediction to fold 2¶
@> 318 atoms and 1 coordinate set(s) were parsed in 0.01s.
@> 624 atoms and 10 coordinate set(s) were parsed in 0.06s.
Blue:ShallowMsa_000_unrelaxed_rank_004_alphafold2_ptm_model_3_seed_000 Red:2naoF
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EsmFold Prediction¶
Best EsmFold prediction to fold 1¶
@> 636 atoms and 10 coordinate set(s) were parsed in 0.06s.
@> 296 atoms and 1 coordinate set(s) were parsed in 0.01s.
reference and target coordinate arrays must have same number of atoms
@> 636 atoms and 10 coordinate set(s) were parsed in 0.06s.
@> 296 atoms and 1 coordinate set(s) were parsed in 0.01s.
ShallowMsa_001_5_TEMP
Blue:1iytA Red:ShallowMsa_001_5
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Best EsmFold prediction to fold 2¶
single positional indexer is out-of-bounds name 'max_esm_pdb2' is not defined
Contact maps Msa Transformers¶
No max_f1Score_pdb1 No max_f1Score_pdb2 No max_precision_pdb1 No max_precision_pdb2 No max_recall_pdb1 No max_recall_pdb2
No max_f1Score_pdb1 No max_f1Score_pdb2 No cmap_pred_precision_1 No cmap_pred_precision_2 No cmap_pred_recall_1 No cmap_pred_recall_2
No plot for f1Score_1 No plot for f1Score_2
No precision_1 No precision_2
No recall_1 No recall_2